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genomic sequencing and assembly  (BGI Shenzhen)

 
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    BGI Shenzhen genomic sequencing and assembly
    Genomic Sequencing And Assembly, supplied by BGI Shenzhen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/genomic+sequencing+and+assembly/genome+sequencing+and+assembly/pmc12151202-171-3-12
    Average 90 stars, based on 1 article reviews
    genomic sequencing and assembly - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Characterization and whole-genome sequencing data of a highly pathogenic group B Streptococcus strain related to stillbirth
    Article Snippet: Genomic sequencing and assembly were carried out at the Beijing Genomics Institute (BGI, Shenzhen, China).



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    Starships are enriched in accessory genes whose presence/absence and genomic location vary across Aspergillus fumigatus strains. All panels visualize data derived from 13 reference-quality A. fumigatus <t>assemblies</t> and the 20 high-confidence Starships ( n = 459 elements total). (A) Box-and-whisker plots summarizing the total percentage of nucleotide sequence and predicted genes carried by Starships per genome. (B) Donut charts summarizing the percentages of gene orthogroups in the core, accessory, singleton, and Starship- associated compartments of the A. fumigatus pangenome . (C) Iceberg plots summarizing the genomic locations of the single best BLASTp hits (≥90% identity, ≥33% query coverage) to the cargo genes from the type elements of all 20 high-confidence Starships (left) and two individual Starships (right; ). Each column in the iceberg plot represents a cargo gene and is color-coded according to the genomic location of hits (full data set in ).
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    Starships are enriched in accessory genes whose presence/absence and genomic location vary across Aspergillus fumigatus strains. All panels visualize data derived from 13 reference-quality A. fumigatus <t>assemblies</t> and the 20 high-confidence Starships ( n = 459 elements total). (A) Box-and-whisker plots summarizing the total percentage of nucleotide sequence and predicted genes carried by Starships per genome. (B) Donut charts summarizing the percentages of gene orthogroups in the core, accessory, singleton, and Starship- associated compartments of the A. fumigatus pangenome . (C) Iceberg plots summarizing the genomic locations of the single best BLASTp hits (≥90% identity, ≥33% query coverage) to the cargo genes from the type elements of all 20 high-confidence Starships (left) and two individual Starships (right; ). Each column in the iceberg plot represents a cargo gene and is color-coded according to the genomic location of hits (full data set in ).
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    Image Search Results


    Genome size estimation of Odontolabis cuvera using GenomeScope.

    Journal: Scientific Data

    Article Title: A chromosomal-level genome assembly of Odontolabis cuvera Hope, 1842 (Coleoptera: Lucanidae)

    doi: 10.1038/s41597-025-05613-5

    Figure Lengend Snippet: Genome size estimation of Odontolabis cuvera using GenomeScope.

    Article Snippet: The raw sequencing data and genome assembly of Odontolabis cuvera are publicly available through the National Center for Biotechnology Information (NCBI).

    Techniques:

    Genome-wide chromosomal heatmap of Odontolabis cuvera , with individual chromosomes outlined in blue and contigs outlined in green.

    Journal: Scientific Data

    Article Title: A chromosomal-level genome assembly of Odontolabis cuvera Hope, 1842 (Coleoptera: Lucanidae)

    doi: 10.1038/s41597-025-05613-5

    Figure Lengend Snippet: Genome-wide chromosomal heatmap of Odontolabis cuvera , with individual chromosomes outlined in blue and contigs outlined in green.

    Article Snippet: The raw sequencing data and genome assembly of Odontolabis cuvera are publicly available through the National Center for Biotechnology Information (NCBI).

    Techniques: Genome Wide

    Genome characteristics of Odontolabis cuvera . The circular genome plot displays, from the outermost to the innermost ring: (1) chromosome length, (2) GC content, (3) gene density, and (4) the distribution of major transposable elements, including DNA transposons, SINEs, LINEs, LTR retrotransposons, and simple repeats.

    Journal: Scientific Data

    Article Title: A chromosomal-level genome assembly of Odontolabis cuvera Hope, 1842 (Coleoptera: Lucanidae)

    doi: 10.1038/s41597-025-05613-5

    Figure Lengend Snippet: Genome characteristics of Odontolabis cuvera . The circular genome plot displays, from the outermost to the innermost ring: (1) chromosome length, (2) GC content, (3) gene density, and (4) the distribution of major transposable elements, including DNA transposons, SINEs, LINEs, LTR retrotransposons, and simple repeats.

    Article Snippet: The raw sequencing data and genome assembly of Odontolabis cuvera are publicly available through the National Center for Biotechnology Information (NCBI).

    Techniques:

    Starships are enriched in accessory genes whose presence/absence and genomic location vary across Aspergillus fumigatus strains. All panels visualize data derived from 13 reference-quality A. fumigatus assemblies and the 20 high-confidence Starships ( n = 459 elements total). (A) Box-and-whisker plots summarizing the total percentage of nucleotide sequence and predicted genes carried by Starships per genome. (B) Donut charts summarizing the percentages of gene orthogroups in the core, accessory, singleton, and Starship- associated compartments of the A. fumigatus pangenome . (C) Iceberg plots summarizing the genomic locations of the single best BLASTp hits (≥90% identity, ≥33% query coverage) to the cargo genes from the type elements of all 20 high-confidence Starships (left) and two individual Starships (right; ). Each column in the iceberg plot represents a cargo gene and is color-coded according to the genomic location of hits (full data set in ).

    Journal: mBio

    Article Title: Giant transposons promote strain heterogeneity in a major fungal pathogen

    doi: 10.1128/mbio.01092-25

    Figure Lengend Snippet: Starships are enriched in accessory genes whose presence/absence and genomic location vary across Aspergillus fumigatus strains. All panels visualize data derived from 13 reference-quality A. fumigatus assemblies and the 20 high-confidence Starships ( n = 459 elements total). (A) Box-and-whisker plots summarizing the total percentage of nucleotide sequence and predicted genes carried by Starships per genome. (B) Donut charts summarizing the percentages of gene orthogroups in the core, accessory, singleton, and Starship- associated compartments of the A. fumigatus pangenome . (C) Iceberg plots summarizing the genomic locations of the single best BLASTp hits (≥90% identity, ≥33% query coverage) to the cargo genes from the type elements of all 20 high-confidence Starships (left) and two individual Starships (right; ). Each column in the iceberg plot represents a cargo gene and is color-coded according to the genomic location of hits (full data set in ).

    Article Snippet: Sequencing reads and genomic assemblies for the 11 isolates sequenced with Oxford Nanopore have been deposited and accessioned at NCBI ( ).

    Techniques: Derivative Assay, Whisker Assay, Sequencing